使用XML包将html表刮成R数据帧


Answers:


144

…或更短的尝试:

library(XML)
library(RCurl)
library(rlist)
theurl <- getURL("https://en.wikipedia.org/wiki/Brazil_national_football_team",.opts = list(ssl.verifypeer = FALSE) )
tables <- readHTMLTable(theurl)
tables <- list.clean(tables, fun = is.null, recursive = FALSE)
n.rows <- unlist(lapply(tables, function(t) dim(t)[1]))

选择的表是页面上最长的表

tables[[which.max(n.rows)]]

readHTMLTable帮助还提供了一个使用htmlParse(),getNodeSet(),textConnection()和read.table()从HTML PRE元素读取纯文本表的示例
Dave X

48
library(RCurl)
library(XML)

# Download page using RCurl
# You may need to set proxy details, etc.,  in the call to getURL
theurl <- "http://en.wikipedia.org/wiki/Brazil_national_football_team"
webpage <- getURL(theurl)
# Process escape characters
webpage <- readLines(tc <- textConnection(webpage)); close(tc)

# Parse the html tree, ignoring errors on the page
pagetree <- htmlTreeParse(webpage, error=function(...){})

# Navigate your way through the tree. It may be possible to do this more efficiently using getNodeSet
body <- pagetree$children$html$children$body 
divbodyContent <- body$children$div$children[[1]]$children$div$children[[4]]
tables <- divbodyContent$children[names(divbodyContent)=="table"]

#In this case, the required table is the only one with class "wikitable sortable"  
tableclasses <- sapply(tables, function(x) x$attributes["class"])
thetable  <- tables[which(tableclasses=="wikitable sortable")]$table

#Get columns headers
headers <- thetable$children[[1]]$children
columnnames <- unname(sapply(headers, function(x) x$children$text$value))

# Get rows from table
content <- c()
for(i in 2:length(thetable$children))
{
   tablerow <- thetable$children[[i]]$children
   opponent <- tablerow[[1]]$children[[2]]$children$text$value
   others <- unname(sapply(tablerow[-1], function(x) x$children$text$value)) 
   content <- rbind(content, c(opponent, others))
}

# Convert to data frame
colnames(content) <- columnnames
as.data.frame(content)

编辑添加:

样品输出

                     Opponent Played Won Drawn Lost Goals for Goals against  % Won
    1               Argentina     94  36    24   34       148           150  38.3%
    2                Paraguay     72  44    17   11       160            61  61.1%
    3                 Uruguay     72  33    19   20       127            93  45.8%
    ...

7
对于其他人谁是有幸找到这个帖子,这个脚本可能不会执行,除非用户将他们的“用户代理”的信息,在这个其他有用的岗位描述:stackoverflow.com/questions/9056705/...
Rguy

26

使用Xpath的另一种选择。

library(RCurl)
library(XML)

theurl <- "http://en.wikipedia.org/wiki/Brazil_national_football_team"
webpage <- getURL(theurl)
webpage <- readLines(tc <- textConnection(webpage)); close(tc)

pagetree <- htmlTreeParse(webpage, error=function(...){}, useInternalNodes = TRUE)

# Extract table header and contents
tablehead <- xpathSApply(pagetree, "//*/table[@class='wikitable sortable']/tr/th", xmlValue)
results <- xpathSApply(pagetree, "//*/table[@class='wikitable sortable']/tr/td", xmlValue)

# Convert character vector to dataframe
content <- as.data.frame(matrix(results, ncol = 8, byrow = TRUE))

# Clean up the results
content[,1] <- gsub(" ", "", content[,1])
tablehead <- gsub(" ", "", tablehead)
names(content) <- tablehead

产生这个结果

> head(content)
   Opponent Played Won Drawn Lost Goals for Goals against % Won
1 Argentina     94  36    24   34       148           150 38.3%
2  Paraguay     72  44    17   11       160            61 61.1%
3   Uruguay     72  33    19   20       127            93 45.8%
4     Chile     64  45    12    7       147            53 70.3%
5      Peru     39  27     9    3        83            27 69.2%
6    Mexico     36  21     6    9        69            34 58.3%

使用xpath的出色调用。次要点:通过将// * /更改为//,可以稍微简化path参数,例如“ // table [@ class ='wikitable sortable'] / tr / th”
Richie Cotton

我收到一个错误消息“脚本应使用带有联系信息的信息性User-Agent字符串,否则它们可能被IP阻止,恕不另行通知。” [2]“有没有办法解决这个问题?
pssguy 2012年

2
选项(RCurlOptions =列表(useragent =“ zzzz”))。另请参见omegahat.org/RCurl/FAQ.html “运行时”部分,以获取其他选择和讨论。
学习者

25

rvest一起xml2是另一个用于解析html网页的流行软件包。

library(rvest)
theurl <- "http://en.wikipedia.org/wiki/Brazil_national_football_team"
file<-read_html(theurl)
tables<-html_nodes(file, "table")
table1 <- html_table(tables[4], fill = TRUE)

该语法比xml软件包更易于使用,对于大多数网页,软件包提供了所需的所有选项。


read_html给我错误“文件:///Users/grieb/Auswertungen/tetyana-snp-2016/data/snp-nexus/15/SNP%20Annotation%20Tool.html”在当前工作目录中不存在(“ / Users / grieb / Auswertungen / tetyana-snp-2016 / code')。”
scs 2016年
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