Let the objects in your universe be the triples (Φ,b,i) where Φ be a Satisfiability problem, on variables x0,…,xk−1, b is either 0 or 1, and i is a bitstring of length k, where Φ(i)=b. That is, i is an assignment to x0,…,xk that satisfies Φ if b is 1 or does not satisfy Φ if b is 0.
Two objects are equivalent if they have the same Φ. Easy to check.
Let the representative object be the lexicographically greatest among all in the equivalence class.
The representative is NP-complete to find: it would solve SAT, since if the lexicographically greatest has b=0, then Φ is unsatisfiable; if it has b=1, it is satisfiable.
Seems that most NP-complete problems can be posed this way; it's a matter of placing the certificate of membership into the encoding of the element.
I thought maybe this was a homework problem, which is why I didn't post the solution earlier. I should have done; I could have used those points that @david-eppstien got. Goodness knows, he doesn't need them.